Research workbench
X-ray structure of protein (EAL/GGDEF domain protein) from M.CAPSULATUS, northeast structural genomics consortium target MCR174C
Analyse X-ray structure of protein (EAL/GGDEF domain protein) from M.CAPSULATUS… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3ICL
- Type
- protein
- Length
- 317 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- EAL/GGDEF domain protein
- UniProt
- Q60BX6
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.44
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | EAL/GGDEF domain protein | protein | 162 | 43% helix, 22% strand | Q60BX6 |
| B | EAL/GGDEF domain protein | protein | 155 | 44% helix, 21% strand | Q60BX6 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 8 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 151 | 0.44 | 0.76 | 36 | empty |
Interfaces
1 interface between chains.
- A–B · 686 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 3ICL · X-Ray Structure of Protein (EAL/GGDEF domain protein) from M.capsulatus, Northeast… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q60BX6
- Elsewhere: RCSB PDB 3ICL · PDBe 3ICL · UniProt Q60BX6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.