Research workbench
Crystal structure of an uncharacterized protein from listeria monocytogenes serotype 4B
Analyse Crystal structure of an uncharacterized protein from listeria monocytogenes… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3IB6
- Type
- protein
- Length
- 715 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- C1KYJ5
- Pockets
- 4 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, D | Uncharacterized protein | protein | 179 | 36% helix, 20% strand | C1KYJ5 |
| C | Uncharacterized protein | protein | 178 | 37% helix, 20% strand | C1KYJ5 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 861 | 0.73 | 0.78 | 106 | empty |
| 2 | 523 | 0.70 | 0.80 | 72 | empty |
| 3 | 187 | 0.52 | 0.78 | 28 | empty |
| 4 | 60 | 0.32 | 0.76 | 19 | empty |
Interfaces
6 interfaces between chains.
- B–D · 1036 Ų buried · 8 hydrogen bonds · protein-protein
- A–C · 885 Ų buried · 7 hydrogen bonds · protein-protein
- A–B · 562 Ų buried · 6 hydrogen bonds · protein-protein
- C–D · 505 Ų buried · 5 hydrogen bonds · protein-protein
- A–D · 185 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 3IB6 · Crystal structure of an uncharacterized protein from Listeria monocytogenes serotype 4b · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C1KYJ5
- Elsewhere: RCSB PDB 3IB6 · PDBe 3IB6 · UniProt C1KYJ5
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