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Crystal structure of the EMAP2/RNA-binding domain of the P43 protein from human aminoacyl-tRNA synthetase complex

Analyse Crystal structure of the EMAP2/RNA-binding domain of the P43 protein from human… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1FL0
Type: protein
Length: 164 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Endothelial-monocyte activating polypeptide II
UniProt: Q12904
Pockets: 1 · best druggability 0.45

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Endothelial-monocyte activating polypeptide II	protein	164	9% helix, 40% strand	Q12904

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	170	0.45	0.75	29	empty

Compared structures

1FL0 · Crystal structure of the EMAP2/RNA-binding domain of the P43 protein from human… · the same entry in another collection · chain A against A, TM-score 1.00
Q12904 · AlphaFold monomer V2.0 prediction for aminoacyl tRNA synthase complex-interacting… · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q12904
Elsewhere: RCSB PDB 1FL0 · PDBe 1FL0 · UniProt Q12904

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