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Crystal structure of a putative type 11 methyltransferase from sulfolobus solfataricus

Analyse Crystal structure of a putative type 11 methyltransferase from sulfolobus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3I9F
Type: protein
Length: 334 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative type 11 methyltransferase
UniProt: Q97YX4
Ligands: ZN
Pockets: 3 · best druggability 0.63

Structure

x-ray diffraction · 2 distinct chains · 27% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative type 11 methyltransferase	protein	165	27% helix, 30% strand	Q97YX4
B	Putative type 11 methyltransferase	protein	169	28% helix, 30% strand	Q97YX4

Ligands and binding sites

ZN · Zinc ion · metal · 6 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	350	0.63	0.79	56	empty
2	174	0.48	0.76	29	empty
3	90	0.38	0.77	21	empty

Interfaces

1 interface between chains.

A–B · 512 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

3I9F · Crystal structure of a putative type 11 methyltransferase from Sulfolobus solfataricus · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q97YX4
Elsewhere: RCSB PDB 3I9F · PDBe 3I9F · UniProt Q97YX4

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