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Ethanolamine utilization microcompartment shell subunit, eutm

Analyse Ethanolamine utilization microcompartment shell subunit, eutm in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3I6P
Type: protein
Length: 540 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ethanolamine utilization protein eutm
UniProt: P0ABF4
Ligands: SO4
Pockets: 1 · best druggability 0.34

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F	Ethanolamine utilization protein eutm	protein	90	40% helix, 37% strand	P0ABF4

Ligands and binding sites

SO4 · Sulfate ion · ion · 3 copies · chains A, B, C, D, E, F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	108	0.34	0.73	24	SO4

Interfaces

6 interfaces between chains.

A–B · 975 Å² buried · 15 hydrogen bonds · protein-protein
A–F · 969 Å² buried · 9 hydrogen bonds · protein-protein
D–E · 968 Å² buried · 16 hydrogen bonds · protein-protein
C–D · 960 Å² buried · 10 hydrogen bonds · protein-protein
B–C · 954 Å² buried · 14 hydrogen bonds · protein-protein

Compared structures

3I6P · Ethanolamine Utilization Microcompartment Shell Subunit, EutM · the same entry in another collection · chain F against F, TM-score 1.00
P0ABF4 · AlphaFold monomer V2.0 prediction for ethanolamine utilization protein eutm (P0ABF4) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0ABF4
Elsewhere: RCSB PDB 3I6P · PDBe 3I6P · UniProt P0ABF4

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