Research workbench
The X-ray crystal structure of a thermophilic cellobiose binding protein bound with cellopentaose
Analyse The X-ray crystal structure of a thermophilic cellobiose binding protein bound… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3I5O
- Type
- protein
- Length
- 1,164 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Oligopeptide ABC transporter, periplasmic oligopeptide- binding protein
- UniProt
- Q9WXN8
- Ligands
- BGC
- Pockets
- 8 · best druggability 0.87
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Oligopeptide ABC transporter, periplasmic oligopeptide- binding protein | protein | 582 | 31% helix, 20% strand | Q9WXN8 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · 10 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 982 | 0.87 | 0.88 | 77 | BGC |
| 2 | 1114 | 0.86 | 0.87 | 88 | BGC |
| 3 | 569 | 0.69 | 0.78 | 42 | empty |
| 4 | 264 | 0.58 | 0.79 | 29 | empty |
| 5 | 73 | 0.53 | 0.86 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 659 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 3I5O · The X-ray crystal structure of a thermophilic cellobiose binding protein bound with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WXN8
- Elsewhere: RCSB PDB 3I5O · PDBe 3I5O · UniProt Q9WXN8
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