Crystal structure of a fusion protein containing the leucine zipper of GCN4 and the ggdef domain of wspr from pseudomonas aeruginosa

Structure

x-ray diffraction · 2 distinct chains · 52% helix, 19% strand (DSSP).

Ligands and binding sites

• C2E · 9,9'-[(2r,3r,3as,5s,7ar,9r,10r,10as,12s,14ar)-3,5,10, 12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3, 2-D:3',2'-J][1,3,7,9,2, 8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) · ligand · 4 copies · chains A, B
• MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Interfaces

1 interface between chains.

• A–B · 1475 Ų buried · 17 hydrogen bonds · protein-protein

Compared structures

• 3I5C · Crystal structure of a fusion protein containing the leucine zipper of GCN4 and the GGDEF… · the same entry in another collection · chain A against A, TM-score 1.00
• P03069 · AlphaFold monomer V2.0 prediction for general control transcription factor GCN4 (P03069) · a predicted model of the same protein · chain B against A, TM-score 0.22

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P03069
• Every structure of UniProt Q9HXT9
• Elsewhere: RCSB PDB 3I5C · PDBe 3I5C · UniProt P03069 · UniProt Q9HXT9