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Crystal structure of the PDZ domain of the sdrc-like protein (LIN2157) from listeria innocua, northeast structural genomics consortium target LKR136C

Analyse Crystal structure of the PDZ domain of the sdrc-like protein (LIN2157) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3I1E
Type: protein
Length: 178 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: LIN2157 protein
UniProt: Q929W6
Pockets: 1 · best druggability 0.80

Structure

x-ray diffraction · 1 distinct chain · 15% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	LIN2157 protein	protein	89	15% helix, 36% strand	Q929W6

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	277	0.80	0.91	43	empty

Interfaces

1 interface between chains.

A–B · 702 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

3I1E · Crystal Structure of the PDZ domain of the SdrC-like Protein (Lin2157) from Listeria… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q929W6
Elsewhere: RCSB PDB 3I1E · PDBe 3I1E · UniProt Q929W6

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