Research workbench
Distinct recognition of three-way DNA junctions by the two enantiomers of a metallo-supramolecular cylinder ('helicate')
Analyse Distinct recognition of three-way DNA junctions by the two enantiomers of a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3I1D
- Type
- DNA
- Length
- 12 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*CP*GP*TP*AP*CP*G)-3'
- Ligands
- NPM, FE2
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 5'-D(*CP*GP*TP*AP*CP*G)-3' | dna | 6 | — | — |
Ligands and binding sites
- NPM · N-[(1E)-pyridin-2-ylmethylene]-N-[4-(4-{[(1E)-pyridin-2-ylmethylene]amino}benzyl)phenyl]amine · ligand · 9 copies · chains A, B
- FE2 · Fe (II) ion · metal · 6 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 3I1D · Distinct recognition of three-way DNA junctions by the two enantiomers of a… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3I1D · PDBe 3I1D
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