Research workbench
Crystal structure of periplasmic binding ribose operon repressor protein from lactobacillus acidophilus
Analyse Crystal structure of periplasmic binding ribose operon repressor protein from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3HS3
- Type
- protein
- Length
- 528 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribose operon repressor
- UniProt
- Q5FJ32
- Pockets
- 7 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Ribose operon repressor | protein | 264 | 39% helix, 21% strand | Q5FJ32 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 574 | 0.70 | 0.79 | 54 | empty |
| 2 | 484 | 0.68 | 0.79 | 44 | empty |
| 3 | 120 | 0.44 | 0.77 | 22 | empty |
| 4 | 77 | 0.41 | 0.79 | 18 | empty |
| 5 | 98 | 0.40 | 0.77 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1425 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 3HS3 · Crystal structure of periplasmic binding ribose operon repressor protein from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5FJ32
- Elsewhere: RCSB PDB 3HS3 · PDBe 3HS3 · UniProt Q5FJ32
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