Research workbench
Putative hemolysin from streptococcus thermophilus.
Analyse Putative hemolysin from streptococcus thermophilus. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3HP7
- Type
- protein
- Length
- 275 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hemolysin, putative
- UniProt
- Q5M3Z4
- Pockets
- 2 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hemolysin, putative | protein | 275 | 36% helix, 19% strand | Q5M3Z4 |
Ligands and binding sites
- EOH · Ethanol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 481 | 0.67 | 0.78 | 52 | EOH |
| 2 | 258 | 0.51 | 0.75 | 29 | empty |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 3HP7 · Putative hemolysin from Streptococcus thermophilus. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5M3Z4
- Elsewhere: RCSB PDB 3HP7 · PDBe 3HP7 · UniProt Q5M3Z4
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