Research workbench
Crystal structure of a murein peptide ligase mpl (PSYC_0032) from psychrobacter arcticus 273-4 at 1.65 a resolution
Analyse Crystal structure of a murein peptide ligase mpl (PSYC_0032) from psychrobacter… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3HN7
- Type
- protein
- Length
- 480 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Udp-N-acetylmuramate-L-alanine ligase
- UniProt
- Q4FVQ2
- Pockets
- 4 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Udp-N-acetylmuramate-L-alanine ligase | protein | 480 | 36% helix, 24% strand | Q4FVQ2 |
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 289 | 0.80 | 0.92 | 39 | empty |
| 2 | 245 | 0.66 | 0.84 | 36 | empty |
| 3 | 271 | 0.61 | 0.80 | 48 | empty |
| 4 | 211 | 0.57 | 0.80 | 30 | empty |
Modifications
Observed in the structure: 15 modified (engineered).
Compared structures
- 3HN7 · Crystal structure of a murein peptide ligase mpl (psyc_0032) from psychrobacter arcticus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4FVQ2
- Elsewhere: RCSB PDB 3HN7 · PDBe 3HN7 · UniProt Q4FVQ2
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