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Crystal structure of BF0290 (YP_210027.1) from bacteroides fragilis nctc 9343 at 1.70 a resolution

Analyse Crystal structure of BF0290 (YP_210027.1) from bacteroides fragilis nctc 9343… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3HN5
Type: protein
Length: 412 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative exported protein BF0290
UniProt: Q5LIG1
Pockets: 4 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 8% helix, 47% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Putative exported protein BF0290	protein	206	8% helix, 47% strand	Q5LIG1

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	397	0.62	0.77	51	empty
2	126	0.51	0.81	35	empty
3	70	0.31	0.74	15	empty
4	67	0.31	0.74	14	empty

Interfaces

1 interface between chains.

A–B · 855 Å² buried · 21 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 14 modified (engineered).

Compared structures

3HN5 · Crystal structure of BF0290 (YP_210027.1) from Bacteroides fragilis NCTC 9343 at 1.70 A… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5LIG1
Elsewhere: RCSB PDB 3HN5 · PDBe 3HN5 · UniProt Q5LIG1

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