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Crystal structure of yeast T-snare protein SSO1

Analyse Crystal structure of yeast T-snare protein SSO1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1FIO
Type: protein
Length: 190 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SSO1 protein
UniProt: P32867
Ligands: ZN
Pockets: 2 · best druggability 0.63

Structure

x-ray diffraction · 1 distinct chain · 86% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	SSO1 protein	protein	190	86% helix, 0% strand	P32867

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	222	0.63	0.82	27	empty
2	162	0.51	0.79	16	empty

Compared structures

1FIO · Crystal structure of yeast T-snare protein SSO1 · the same entry in another collection · chain A against A, TM-score 1.00
P32867 · AlphaFold monomer V2.0 prediction for protein SSO1 (P32867) · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P32867
Elsewhere: RCSB PDB 1FIO · PDBe 1FIO · UniProt P32867

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