Research workbench
Crystal structure of a ferritin like protein (CC_0557) from caulobacter vibrioides at 1.95 a resolution
Analyse Crystal structure of a ferritin like protein (CC_0557) from caulobacter… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3HL1
- Type
- protein
- Length
- 571 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferritin like protein
- UniProt
- Q9AAP0
- Ligands
- UNL
- Pockets
- 6 · best druggability 0.70
Structure
x-ray diffraction · 2 distinct chains · 56% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ferritin like protein | protein | 289 | 56% helix, 2% strand | Q9AAP0 |
| B | Ferritin like protein | protein | 282 | 57% helix, 2% strand | Q9AAP0 |
Ligands and binding sites
- UNL · Unknown ligand · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 394 | 0.70 | 0.82 | 56 | UNL |
| 2 | 184 | 0.65 | 0.84 | 28 | empty |
| 3 | 160 | 0.61 | 0.83 | 28 | empty |
| 4 | 91 | 0.36 | 0.75 | 22 | empty |
| 5 | 70 | 0.35 | 0.76 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 628 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 15 modified (engineered).
Compared structures
- 3HL1 · Crystal structure of a ferritin like protein (CC_0557) from caulobacter vibrioides at… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9AAP0
- Elsewhere: RCSB PDB 3HL1 · PDBe 3HL1 · UniProt Q9AAP0
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