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Structure of laminin binding protein (lmb) of streptococcus agalactiae a bifunctional protein with adhesin and metal transporting activity

Analyse Structure of laminin binding protein (lmb) of streptococcus agalactiae a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3HJT
Type: protein
Length: 517 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lmb
UniProt: Q9ZHG8
Ligands: ZN
Pockets: 6 · best druggability 0.62

Structure

x-ray diffraction · 2 distinct chains · 46% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lmb	protein	260	46% helix, 17% strand	Q9ZHG8
B	Lmb	protein	257	47% helix, 17% strand	Q9ZHG8

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	271	0.62	0.80	35	empty
2	120	0.38	0.74	26	empty
3	119	0.36	0.73	30	empty
4	50	0.32	0.78	18	empty
5	86	0.32	0.73	23	empty

Interfaces

1 interface between chains.

A–B · 453 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

3HJT · Structure of laminin binding protein (Lmb) of Streptococcus agalactiae A bifunctional… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

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Every structure of UniProt Q9ZHG8
Elsewhere: RCSB PDB 3HJT · PDBe 3HJT · UniProt Q9ZHG8

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