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Crystal structure determination of catechol 1,2-dioxygenase from rhodococcus opacus 1CP in complex with pyrogallol

Analyse Crystal structure determination of catechol 1,2-dioxygenase from rhodococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3HHX
Type: protein
Length: 256 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Catechol 1,2-dioxygenase
EC: 1.13.11.1
UniProt: P95607
Ligands: 6PL, PYG, FE

Structure

x-ray diffraction · 1 distinct chain · 28% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Catechol 1,2-dioxygenase (EC 1.13.11.1)	protein	256	28% helix, 25% strand	P95607

Ligands and binding sites

6PL · (4S,7R)-4-hydroxy-N,N,N-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide · ligand · chains A
PYG · Benzene-1,2,3-triol · ligand · chains A
FE · Fe (III) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

3HHX · Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP… · the same entry in another collection · chain A against A, TM-score 1.00
P95607 · AlphaFold monomer V2.0 prediction for catechol 1,2-dioxygenase (P95607) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P95607
Elsewhere: RCSB PDB 3HHX · PDBe 3HHX · UniProt P95607

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