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Crystal structure of tomato OPR1 in complex with phb
Analyse Crystal structure of tomato OPR1 in complex with phb in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3HGR
- Type
- protein
- Length
- 707 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 12-oxophytodienoate reductase 1
- EC
- 1.3.1.42
- UniProt
- Q9XG54
- Ligands
- FMN, PHB
- Pockets
- 2 · best druggability 0.71
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 12-oxophytodienoate reductase 1 (EC 1.3.1.42) | protein | 353 | 35% helix, 15% strand | Q9XG54 |
| B | 12-oxophytodienoate reductase 1 (EC 1.3.1.42) | protein | 354 | 36% helix, 15% strand | Q9XG54 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · 2 copies · chains A, B
- PHB · P-hydroxybenzoic acid · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 570 | 0.71 | 0.79 | 55 | FMN, PHB |
| 2 | 553 | 0.69 | 0.78 | 52 | FMN, PHB |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9XG54
- Elsewhere: RCSB PDB 3HGR · PDBe 3HGR · UniProt Q9XG54
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