Research workbench
Crystal structure of pseg from campylobacter jejuni
Analyse Crystal structure of pseg from campylobacter jejuni in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3HBM
- Type
- protein
- Length
- 281 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Udp-sugar hydrolase
- UniProt
- Q0P8U5
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Udp-sugar hydrolase | protein | 281 | 35% helix, 22% strand | Q0P8U5 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 517 | 0.76 | 0.84 | 53 | SO4 |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 3HBM · Crystal Structure of PseG from Campylobacter jejuni · the same entry in another collection · chain A against A, TM-score 1.00
- Q0P8U5 · AlphaFold monomer V2.0 prediction for udp-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyran… · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0P8U5
- Elsewhere: RCSB PDB 3HBM · PDBe 3HBM · UniProt Q0P8U5
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