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Crystal structure of the PSPTO_3016 protein from pseudomonas syringae, northeast structural genomics consortium target PSR293

Analyse Crystal structure of the PSPTO_3016 protein from pseudomonas syringae… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3H9X
Type: protein
Length: 468 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein PSPTO_3016
UniProt: Q880Y4
Pockets: 2 · best druggability 0.56

Structure

x-ray diffraction · 1 distinct chain · 28% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	Uncharacterized protein PSPTO_3016	protein	117	28% helix, 26% strand	Q880Y4

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	197	0.56	0.80	26	empty
2	176	0.55	0.80	25	empty

Interfaces

3 interfaces between chains.

A–C · 366 Å² buried · 3 hydrogen bonds · protein-protein
B–D · 354 Å² buried · 2 hydrogen bonds · protein-protein
A–B · 95 Å² buried · 1 hydrogen bond · protein-protein

Modifications

Observed in the structure: 12 modified (engineered).

Compared structures

3H9X · Crystal Structure of the PSPTO_3016 protein from Pseudomonas syringae, Northeast… · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q880Y4
Elsewhere: RCSB PDB 3H9X · PDBe 3H9X · UniProt Q880Y4

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