Research workbench
Structure of D132N T4 RNase H in the presence of divalent magnesium
Analyse Structure of D132N T4 RNase H in the presence of divalent magnesium in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3H8W
- Type
- protein
- Length
- 284 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribonuclease H
- EC
- 3.1.26.4
- UniProt
- P13319
- Pockets
- 4 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 53% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribonuclease H (EC 3.1.26.4) | protein | 284 | 53% helix, 10% strand | P13319 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 231 | 0.59 | 0.80 | 37 | empty |
| 2 | 64 | 0.38 | 0.79 | 16 | empty |
| 3 | 87 | 0.35 | 0.75 | 13 | empty |
| 4 | 54 | 0.32 | 0.76 | 13 | empty |
Compared structures
- 3H8W · Structure of D132N T4 RNase H in the presence of divalent magnesium · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P13319
- Elsewhere: RCSB PDB 3H8W · PDBe 3H8W · UniProt P13319
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