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Crystal structure of a putative branched-chain amino acid ABC transporter from silicibacter pomeroyi

Analyse Crystal structure of a putative branched-chain amino acid ABC transporter from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3H5L
Type: protein
Length: 799 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative branched-chain amino acid ABC transporter
UniProt: Q5LQF6
Pockets: 7 · best druggability 0.77

Structure

x-ray diffraction · 2 distinct chains · 41% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative branched-chain amino acid ABC transporter	protein	397	41% helix, 19% strand	Q5LQF6
B	Putative branched-chain amino acid ABC transporter	protein	402	41% helix, 18% strand	Q5LQF6

Pockets

7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	558	0.77	0.83	59	empty
2	433	0.73	0.83	48	empty
3	54	0.46	0.84	17	empty
4	102	0.44	0.79	19	empty
5	169	0.44	0.74	21	empty

Interfaces

1 interface between chains.

A–B · 687 Å² buried · 14 hydrogen bonds · protein-protein

Compared structures

3H5L · Crystal structure of a putative branched-chain amino acid ABC transporter from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5LQF6
Elsewhere: RCSB PDB 3H5L · PDBe 3H5L · UniProt Q5LQF6

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