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Crystal structure of a putative ribokinase (apo form) from E.COLI at 1.8A resolution
Analyse Crystal structure of a putative ribokinase (apo form) from E.COLI at 1.8A… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3H49
- Type
- protein
- Length
- 606 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribokinase
- EC
- 2.7.1.-
- UniProt
- P77493
- Pockets
- 3 · best druggability 0.64
Structure
x-ray diffraction · 2 distinct chains · 38% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribokinase (EC 2.7.1.-) | protein | 307 | 37% helix, 22% strand | P77493 |
| B | Ribokinase (EC 2.7.1.-) | protein | 299 | 39% helix, 22% strand | P77493 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 555 | 0.64 | 0.76 | 55 | empty |
| 2 | 512 | 0.63 | 0.76 | 59 | empty |
| 3 | 72 | 0.38 | 0.78 | 16 | empty |
Modifications
Observed in the structure: 12 modified, 2 disulfide (engineered, disulfide).
Compared structures
- 3H49 · Crystal structure of a putative Ribokinase (Apo Form) from E.coli at 1.8A resolution · the same entry in another collection · chain A against A, TM-score 1.00
- P77493 · AlphaFold monomer V2.0 prediction for uncharacterized sugar kinase ydjh (P77493) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P77493
- Elsewhere: RCSB PDB 3H49 · PDBe 3H49 · UniProt P77493
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