Research workbench
Crystal structure of a putative lipid binding protein (BT_2261) from bacteroides thetaiotaomicron vpi-5482 at 2.20 a resolution
Analyse Crystal structure of a putative lipid binding protein (BT_2261) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3H3I
- Type
- protein
- Length
- 414 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative lipid binding protein
- UniProt
- Q8A5H8
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.40
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Putative lipid binding protein | protein | 138 | 4% helix, 51% strand | Q8A5H8 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 6 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 67 | 0.40 | 0.80 | 15 | empty |
Interfaces
2 interfaces between chains.
- A–B · 494 Ų buried · 4 hydrogen bonds · protein-protein
- B–C · 210 Ų buried · 1 hydrogen bond · protein-protein
Modifications
Observed in the structure: 15 modified (engineered).
Compared structures
- 3H3I · Crystal structure of a putative lipid binding protein (BT_2261) from bacteroides… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8A5H8
- Elsewhere: RCSB PDB 3H3I · PDBe 3H3I · UniProt Q8A5H8
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