Research workbench
Ppce, a cytochrome C7 from geobacter sulfurreducens
Analyse Ppce, a cytochrome C7 from geobacter sulfurreducens in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3H34
- Type
- protein
- Length
- 70 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C7
- UniProt
- Q74CB4
- Ligands
- HEM
- Pockets
- 1 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C7 | protein | 70 | 37% helix, 10% strand | Q74CB4 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 389 | 0.67 | 0.80 | 47 | HEM |
Modifications
Observed in the structure: 6 cofactor (heme attachment).
Compared structures
- 3H34 · PpcE, A cytochrome c7 from Geobacter sulfurreducens · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q74CB4
- Elsewhere: RCSB PDB 3H34 · PDBe 3H34 · UniProt Q74CB4
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