Research workbench
Crystal structure of a chemotactic chec-like protein (SO_3915) from shewanella oneidensis mr-1 at 1.86 a resolution
Analyse Crystal structure of a chemotactic chec-like protein (SO_3915) from shewanella… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3H2D
- Type
- protein
- Length
- 307 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chec-like superfamily protein
- UniProt
- Q8EAI7
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.34
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chec-like superfamily protein | protein | 153 | 37% helix, 36% strand | Q8EAI7 |
| B | Chec-like superfamily protein | protein | 154 | 35% helix, 36% strand | Q8EAI7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 50 | 0.34 | 0.78 | 12 | empty |
| 2 | 66 | 0.30 | 0.74 | 16 | empty |
| 3 | 63 | 0.29 | 0.74 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 1174 Ų buried · 17 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 18 modified (engineered).
Compared structures
- 3H2D · Crystal structure of a chemotactic chec-like protein (so_3915) from shewanella oneidensis… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8EAI7
- Elsewhere: RCSB PDB 3H2D · PDBe 3H2D · UniProt Q8EAI7
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