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The fragment structure of a putative hsdr subunit of a type I restriction enzyme from vibrio vulnificus YJ016

Analyse The fragment structure of a putative hsdr subunit of a type I restriction… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3H1T
Type: protein
Length: 515 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Type I site-specific restriction-modification system, R (restriction) subunit
UniProt: Q7MPU7
Pockets: 5 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Type I site-specific restriction-modification system, R (restriction) subunit	protein	515	34% helix, 24% strand	Q7MPU7

Pockets

5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	98	0.65	0.89	18	empty
2	73	0.57	0.88	17	empty
3	243	0.57	0.78	33	empty
4	106	0.46	0.79	22	empty
5	62	0.31	0.75	14	empty

Modifications

Observed in the structure: 7 modified (engineered).

Compared structures

3H1T · The fragment structure of a putative HsdR subunit of a type I restriction enzyme from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7MPU7
Elsewhere: RCSB PDB 3H1T · PDBe 3H1T · UniProt Q7MPU7

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