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Crystal structure of a putative aminotransferase from silicibacter pomeroyi

Analyse Crystal structure of a putative aminotransferase from silicibacter pomeroyi in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3H14
Type: protein
Length: 370 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Aminotransferase, classes I and II
UniProt: Q5LQA4
Pockets: 3 · best druggability 0.60

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Aminotransferase, classes I and II	protein	370	45% helix, 15% strand	Q5LQA4

Ligands and binding sites

GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	270	0.60	0.79	40	empty
2	70	0.33	0.75	17	empty
3	59	0.31	0.76	13	empty

Modifications

Observed in the structure: 11 modified (engineered).

Compared structures

3H14 · Crystal structure of a putative aminotransferase from Silicibacter pomeroyi · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5LQA4
Elsewhere: RCSB PDB 3H14 · PDBe 3H14 · UniProt Q5LQA4

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