Research workbench
Crystal structure of an adenylated kinase related protein from sulfolobus solfataricus to 3.25A
Analyse Crystal structure of an adenylated kinase related protein from sulfolobus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3H0K
- Type
- protein
- Length
- 340 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- UPF0200 protein SSO1041
- UniProt
- Q97Z90
- Ligands
- SO4
- Pockets
- 5 · best druggability 0.50
Structure
x-ray diffraction · 2 distinct chains · 56% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | UPF0200 protein SSO1041 | protein | 171 | 54% helix, 14% strand | Q97Z90 |
| B | UPF0200 protein SSO1041 | protein | 169 | 57% helix, 15% strand | Q97Z90 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 270 | 0.50 | 0.74 | 34 | empty |
| 2 | 135 | 0.48 | 0.79 | 28 | empty |
| 3 | 167 | 0.48 | 0.76 | 28 | empty |
| 4 | 75 | 0.32 | 0.74 | 19 | empty |
| 5 | 66 | 0.27 | 0.71 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 756 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 3H0K · Crystal structure of an adenylated kinase related protein from sulfolobus solfataricus to… · the same entry in another collection · chain A against A, TM-score 1.00
- Q97Z90 · AlphaFold monomer V2.0 prediction for UPF0200 protein SSO1041 (Q97Z90) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97Z90
- Elsewhere: RCSB PDB 3H0K · PDBe 3H0K · UniProt Q97Z90
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