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Crystal structure of putatitve short chain dehydrogenase from shigella flexneri 2A str. 301 complexed with NADP

Analyse Crystal structure of putatitve short chain dehydrogenase from shigella flexneri… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3GY0
Type: protein
Length: 239 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dehydrogenase
UniProt: Q83RM3
Ligands: NAP
Pockets: 1 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 49% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Dehydrogenase	protein	239	49% helix, 15% strand	Q83RM3

Ligands and binding sites

NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	406	0.74	0.84	43	NAP

Compared structures

3GY0 · Crystal structure of putatitve short chain dehydrogenase FROM SHIGELLA FLEXNERI 2A STR.… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q83RM3
Elsewhere: RCSB PDB 3GY0 · PDBe 3GY0 · UniProt Q83RM3

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