Research workbench
Crystal structure of putative CTP pyrophosphohydrolase from bacteroides fragilis
Analyse Crystal structure of putative CTP pyrophosphohydrolase from bacteroides fragilis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3GWY
- Type
- protein
- Length
- 254 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative CTP pyrophosphohydrolase
- UniProt
- Q5LBB1
- Pockets
- 3 · best druggability 0.51
Structure
x-ray diffraction · 2 distinct chains · 22% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative CTP pyrophosphohydrolase | protein | 121 | 23% helix, 40% strand | Q5LBB1 |
| B | Putative CTP pyrophosphohydrolase | protein | 133 | 21% helix, 41% strand | Q5LBB1 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 240 | 0.51 | 0.75 | 28 | empty |
| 2 | 161 | 0.48 | 0.77 | 28 | empty |
| 3 | 107 | 0.40 | 0.76 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1006 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 3GWY · Crystal structure of putative CTP pyrophosphohydrolase from Bacteroides fragilis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5LBB1
- Elsewhere: RCSB PDB 3GWY · PDBe 3GWY · UniProt Q5LBB1
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