Research workbench
Crystallographic ab initio protein solution far below atomic resolution
Analyse Crystallographic ab initio protein solution far below atomic resolution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3GWH
- Type
- protein
- Length
- 199 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transcriptional antiterminator (bglg family)
- UniProt
- O31691
- Ligands
- PO4
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 2 distinct chains · 75% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transcriptional antiterminator (bglg family) | protein | 98 | 72% helix, 0% strand | O31691 |
| B | Transcriptional antiterminator (bglg family) | protein | 101 | 77% helix, 0% strand | O31691 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 90 | 0.34 | 0.74 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 2746 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 3GWH · Crystallographic Ab Initio protein solution far below atomic resolution · the same entry in another collection · chain A against A, TM-score 1.00
- O31691 · AlphaFold monomer V2.0 prediction for ptsghi operon antiterminator (O31691) · a predicted model of the same protein · chain B against A, TM-score 0.50
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O31691
- Elsewhere: RCSB PDB 3GWH · PDBe 3GWH · UniProt O31691
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