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Crystal structure of peptidase M16 inactive domain from pseudomonas fluorescens. northeast structural genomics target PLR293L
Analyse Crystal structure of peptidase M16 inactive domain from pseudomonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3GWB
- Type
- protein
- Length
- 824 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptidase M16 inactive domain family protein
- UniProt
- Q4K4B6
- Pockets
- 15 · best druggability 0.55
Structure
x-ray diffraction · 2 distinct chains · 46% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptidase M16 inactive domain family protein | protein | 412 | 47% helix, 19% strand | Q4K4B6 |
| B | Peptidase M16 inactive domain family protein | protein | 412 | 46% helix, 19% strand | Q4K4B6 |
Pockets
15 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 348 | 0.55 | 0.74 | 51 | empty |
| 2 | 142 | 0.54 | 0.81 | 33 | empty |
| 3 | 206 | 0.50 | 0.76 | 43 | empty |
| 4 | 257 | 0.47 | 0.73 | 34 | empty |
| 5 | 98 | 0.45 | 0.80 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 1427 Ų buried · 19 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 28 modified (engineered).
Compared structures
- 3GWB · Crystal structure of peptidase M16 inactive domain from Pseudomonas fluorescens.… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4K4B6
- Elsewhere: RCSB PDB 3GWB · PDBe 3GWB · UniProt Q4K4B6
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