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Crystal structure of an endo-neuraminidasenf mutant

Analyse Crystal structure of an endo-neuraminidasenf mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3GVJ
Type: protein
Length: 670 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Endo-N-acetylneuraminidase
EC: 3.2.1.129
UniProt: Q858B1
Ligands: SIA, SLB
Pockets: 5 · best druggability 0.53

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Endo-N-acetylneuraminidase (EC 3.2.1.129)	protein	670	3% helix, 37% strand	Q858B1

Ligands and binding sites

SIA · N-acetyl-alpha-neuraminic acid · sugar · 7 copies · chains A
SLB · N-acetyl-beta-neuraminic acid · sugar · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	262	0.53	0.76	35	empty
2	203	0.52	0.77	26	empty
3	54	0.48	0.86	15	empty
4	90	0.34	0.74	24	empty
5	69	0.33	0.76	15	empty

Compared structures

3GVJ · Crystal structure of an endo-neuraminidaseNF mutant · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q858B1
Elsewhere: RCSB PDB 3GVJ · PDBe 3GVJ · UniProt Q858B1

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