Research workbench
Crystal structure of disulfide interchange protein from neisseria gonorrhoeae
Analyse Crystal structure of disulfide interchange protein from neisseria gonorrhoeae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3GV1
- Type
- protein
- Length
- 419 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Disulfide interchange protein
- UniProt
- Q5F6V7
- Ligands
- BEZ
- Pockets
- 2 · best druggability 0.61
Structure
x-ray diffraction · 2 distinct chains · 37% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Disulfide interchange protein | protein | 140 | 36% helix, 18% strand | Q5F6V7 |
| B | Disulfide interchange protein | protein | 139 | 37% helix, 18% strand | Q5F6V7 |
Ligands and binding sites
- BEZ · Benzoic acid · ligand · 3 copies · chains A, C, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 192 | 0.61 | 0.82 | 39 | BEZ |
| 2 | 136 | 0.57 | 0.83 | 31 | BEZ |
Interfaces
2 interfaces between chains.
- A–C · 831 Ų buried · 8 hydrogen bonds · protein-protein
- A–B · 820 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 17 modified (engineered).
Compared structures
- 3GV1 · Crystal structure of disulfide interchange protein from Neisseria gonorrhoeae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5F6V7
- Elsewhere: RCSB PDB 3GV1 · PDBe 3GV1 · UniProt Q5F6V7
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