Research workbench
Crystal structure of a putative zn-dependent exopeptidase (BVU_1317) from bacteroides vulgatus atcc 8482 at 1.80 a resolution
Analyse Crystal structure of a putative zn-dependent exopeptidase (BVU_1317) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3GUX
- Type
- protein
- Length
- 493 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative zn-dependent exopeptidase
- UniProt
- A6KZZ2
- Pockets
- 1 · best druggability 0.71
Structure
x-ray diffraction · 2 distinct chains · 39% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative zn-dependent exopeptidase | protein | 247 | 38% helix, 23% strand | A6KZZ2 |
| B | Putative zn-dependent exopeptidase | protein | 246 | 40% helix, 23% strand | A6KZZ2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 535 | 0.71 | 0.79 | 45 | empty |
Interfaces
1 interface between chains.
- A–B · 372 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 3GUX · Crystal structure of a putative zn-dependent exopeptidase (bvu_1317) from bacteroides… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6KZZ2
- Elsewhere: RCSB PDB 3GUX · PDBe 3GUX · UniProt A6KZZ2
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