Research workbench
Crystal structure of prophage tail protein GP18 (NP_465809.1) from listeria monocytogenes egd-E at 1.70 a resolution
Analyse Crystal structure of prophage tail protein GP18 (NP_465809.1) from listeria… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3GS9
- Type
- protein
- Length
- 326 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein GP18
- UniProt
- Q8Y4Z4
- Pockets
- 6 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 17% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein GP18 | protein | 326 | 17% helix, 41% strand | Q8Y4Z4 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 542 | 0.68 | 0.78 | 38 | empty |
| 2 | 102 | 0.38 | 0.75 | 20 | empty |
| 3 | 60 | 0.35 | 0.77 | 18 | empty |
| 4 | 68 | 0.31 | 0.74 | 16 | empty |
| 5 | 75 | 0.31 | 0.74 | 19 | empty |
Modifications
Observed in the structure: 26 modified (methylation, engineered, oxidation).
Compared structures
- 3GS9 · Crystal structure of prophage tail protein gp18 (NP_465809.1) from Listeria monocytogenes… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8Y4Z4
- Elsewhere: RCSB PDB 3GS9 · PDBe 3GS9 · UniProt Q8Y4Z4
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