Research workbench

Staphylococcal enterotoxin B mutant N23YK97SK98S

Analyse Staphylococcal enterotoxin B mutant N23YK97SK98S in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3GP7
Type: protein
Length: 449 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Enterotoxin type B
UniProt: P01552
Pockets: 5 · best druggability 0.60

Structure

x-ray diffraction · 2 distinct chains · 19% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Enterotoxin type B	protein	226	19% helix, 39% strand	P01552
B	Enterotoxin type B	protein	223	19% helix, 41% strand	P01552

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	305	0.60	0.78	42	empty
2	76	0.45	0.81	25	empty
3	62	0.44	0.82	23	empty
4	92	0.38	0.76	22	empty
5	77	0.36	0.77	20	empty

Interfaces

1 interface between chains.

A–B · 754 Å² buried · 8 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

3GP7 · Staphylococcal Enterotoxin B mutant N23YK97SK98S · the same entry in another collection · chain A against A, TM-score 1.00
P01552 · AlphaFold monomer V2.0 prediction for enterotoxin type B (P01552) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P01552
Elsewhere: RCSB PDB 3GP7 · PDBe 3GP7 · UniProt P01552

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