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Crystal structure of alcohol dehydrogenase superfamily protein (NP_718042.1) from shewanella oneidensis at 1.55 a resolution

Analyse Crystal structure of alcohol dehydrogenase superfamily protein (NP_718042.1)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3GOH
Type: protein
Length: 297 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Alcohol dehydrogenase, zinc-containing
UniProt: Q8EED0
Pockets: 3 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 32% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Alcohol dehydrogenase, zinc-containing	protein	297	32% helix, 31% strand	Q8EED0

Ligands and binding sites

GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	445	0.68	0.79	54	GOL
2	58	0.35	0.78	22	empty
3	58	0.29	0.75	15	empty

Modifications

Observed in the structure: 7 modified (engineered).

Compared structures

3GOH · Crystal structure of alcohol dehydrogenase superfamily protein (NP_718042.1) from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8EED0
Elsewhere: RCSB PDB 3GOH · PDBe 3GOH · UniProt Q8EED0

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