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Crystal structure of a multidomain protein with nucleic acid binding domains (SP_0946) from streptococcus pneumoniae TIGR4 at 1.40 a resolution
Analyse Crystal structure of a multidomain protein with nucleic acid binding domains… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3GO5
- Type
- protein
- Length
- 285 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Multidomain protein with S1 RNA-binding domains
- UniProt
- Q97R81
- Ligands
- CL
- Pockets
- 3 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 18% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Multidomain protein with S1 RNA-binding domains | protein | 285 | 18% helix, 39% strand | Q97R81 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 89 | 0.45 | 0.79 | 20 | EDO |
| 2 | 63 | 0.30 | 0.75 | 19 | empty |
| 3 | 68 | 0.29 | 0.73 | 14 | empty |
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 3GO5 · Crystal structure of a multidomain protein with nucleic acid binding domains (sp_0946)… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97R81
- Elsewhere: RCSB PDB 3GO5 · PDBe 3GO5 · UniProt Q97R81
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