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Toxin fold for microbial attack and plant defense

Analyse Toxin fold for microbial attack and plant defense in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3GNZ
Type: protein
Length: 211 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 25 kda protein elicitor
UniProt: Q9SPD4
Ligands: MG
Pockets: 1 · best druggability 0.45

Structure

x-ray diffraction · 1 distinct chain · 19% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
P	25 kda protein elicitor	protein	211	19% helix, 35% strand	Q9SPD4

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains P

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	106	0.45	0.79	20	MG

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

3GNZ · Toxin fold for microbial attack and plant defense · the same entry in another collection · chain P against P, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9SPD4
Elsewhere: RCSB PDB 3GNZ · PDBe 3GNZ · UniProt Q9SPD4

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