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Crystal structure of putative arsc family related protein from bacteroides fragilis

Analyse Crystal structure of putative arsc family related protein from bacteroides… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3GKX
Type: protein
Length: 236 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative arsc family related protein
UniProt: Q5L9Z8
Pockets: 2 · best druggability 0.61

Structure

x-ray diffraction · 2 distinct chains · 47% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative arsc family related protein	protein	117	47% helix, 14% strand	Q5L9Z8
B	Putative arsc family related protein	protein	119	48% helix, 13% strand	Q5L9Z8

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	105	0.61	0.87	26	empty
2	114	0.35	0.73	24	empty

Interfaces

1 interface between chains.

A–B · 389 Å² buried · 4 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

3GKX · Crystal structure of putative ArsC family related protein from Bacteroides fragilis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5L9Z8
Elsewhere: RCSB PDB 3GKX · PDBe 3GKX · UniProt Q5L9Z8

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