Research workbench
Insights into the alkyl peroxide reduction activity of xanthomonas campestris bacterioferritin comigratory protein from the trapped INTERMEDIATE/LIGAND complex structures
Analyse Insights into the alkyl peroxide reduction activity of xanthomonas campestris… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3GKK
- Type
- protein
- Length
- 156 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bacterioferritin comigratory protein
- EC
- 1.11.1.15
- UniProt
- Q8P9V9
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.36
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Bacterioferritin comigratory protein (EC 1.11.1.15) | protein | 156 | 31% helix, 28% strand | Q8P9V9 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 76 | 0.36 | 0.77 | 19 | empty |
| 2 | 75 | 0.35 | 0.76 | 14 | SO4 |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 3GKK · Insights into the Alkyl Peroxide Reduction Activity of Xanthomonas campestris… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8P9V9 · AlphaFold monomer V2.0 prediction for peroxiredoxin bcp (Q8P9V9) · a predicted model of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8P9V9
- Elsewhere: RCSB PDB 3GKK · PDBe 3GKK · UniProt Q8P9V9
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