Research workbench
Crystal structure of a probable spermidine synthase from corynebacterium glutamicum atcc 13032
Analyse Crystal structure of a probable spermidine synthase from corynebacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3GJY
- Type
- protein
- Length
- 279 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Spermidine synthase
- UniProt
- Q8NR27
- Pockets
- 2 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Spermidine synthase | protein | 279 | 34% helix, 28% strand | Q8NR27 |
Ligands and binding sites
- FMT · Formic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 147 | 0.64 | 0.86 | 26 | empty |
| 2 | 80 | 0.35 | 0.76 | 18 | empty |
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 3GJY · Crystal structure of a probable spermidine synthase from Corynebacterium glutamicum ATCC… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NR27
- Elsewhere: RCSB PDB 3GJY · PDBe 3GJY · UniProt Q8NR27
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