Research workbench
Crystal structure of a putative aminotransferase (MLL7127) from mesorhizobium loti MAFF303099 at 1.55 a resolution
Analyse Crystal structure of a putative aminotransferase (MLL7127) from mesorhizobium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3GJU
- Type
- protein
- Length
- 458 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative aminotransferase
- UniProt
- Q987B2
- Ligands
- PLP
- Pockets
- 4 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative aminotransferase | protein | 458 | 43% helix, 17% strand | Q987B2 |
Ligands and binding sites
- PLP · Pyridoxal-5'-phosphate · ligand · chains A
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 330 | 0.61 | 0.78 | 33 | empty |
| 2 | 248 | 0.45 | 0.72 | 25 | empty |
| 3 | 93 | 0.36 | 0.75 | 21 | empty |
| 4 | 54 | 0.26 | 0.73 | 18 | empty |
Modifications
Observed in the structure: 13 modified, 1 cofactor (engineered, pyridoxal phosphate Schiff base, cofactor).
Compared structures
- 3GJU · Crystal structure of a putative aminotransferase (mll7127) from mesorhizobium loti… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q987B2
- Elsewhere: RCSB PDB 3GJU · PDBe 3GJU · UniProt Q987B2
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