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Structure of the second type II cohesin module from the adaptor scaa scaffoldin of acetivibrio cellulolyticus (including long C-terminal linker)
Analyse Structure of the second type II cohesin module from the adaptor scaa scaffoldin… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3GHP
- Type
- protein
- Length
- 373 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cellulosomal scaffoldin adaptor protein B
- UniProt
- Q7WYN3
- Pockets
- 2 · best druggability 0.60
Structure
x-ray diffraction · 2 distinct chains · 6% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cellulosomal scaffoldin adaptor protein B | protein | 190 | 6% helix, 36% strand | Q7WYN3 |
| B | Cellulosomal scaffoldin adaptor protein B | protein | 183 | 7% helix, 38% strand | Q7WYN3 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 14 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 257 | 0.60 | 0.80 | 36 | empty |
| 2 | 220 | 0.58 | 0.80 | 36 | EDO |
Interfaces
1 interface between chains.
- A–B · 787 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 3GHP · Structure of the second type II cohesin module from the adaptor ScaA scaffoldin of… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7WYN3
- Elsewhere: RCSB PDB 3GHP · PDBe 3GHP · UniProt Q7WYN3
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