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Locating monovalent cations in one turn of G/C rich B-DNA

Analyse Locating monovalent cations in one turn of G/C rich B-DNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
3GGI
Type
DNA
Length
10 nucleotides
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3'
Ligands
TL, MG

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3'dna10——

Ligands and binding sites

  • TL · Thallium (I) ion · metal · 6 copies · chains A
  • MG · Magnesium ion · metal · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 3GGI · Locating monovalent cations in one turn of G/C rich B-DNA · the same entry in another collection · chain A against A, TM-score 1.00

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