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Crystal structure of an uncharacterized metalloprotein from deinococcus radiodurans

Analyse Crystal structure of an uncharacterized metalloprotein from deinococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3GG7
Type: protein
Length: 243 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized metalloprotein
UniProt: Q9RZH8
Ligands: MN, SO4
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 54% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized metalloprotein	protein	243	54% helix, 17% strand	Q9RZH8

Ligands and binding sites

MN · Manganese (II) ion · metal · chains A
SO4 · Sulfate ion · ion · 2 copies · chains A
MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains A
MRD · (4R)-2-methylpentane-2,4-diol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	86	0.36	0.76	17	empty

Compared structures

3GG7 · Crystal structure of an uncharacterized metalloprotein from Deinococcus radiodurans · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9RZH8
Elsewhere: RCSB PDB 3GG7 · PDBe 3GG7 · UniProt Q9RZH8

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