Research workbench
Crystal structure of eutl shell protein of the bacterial ethanolamine micrompartment
Analyse Crystal structure of eutl shell protein of the bacterial ethanolamine… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3GFH
- Type
- protein
- Length
- 428 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ethanolamine utilization protein eutl
- UniProt
- P76541
- Ligands
- HG
- Pockets
- 4 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Ethanolamine utilization protein eutl | protein | 214 | 32% helix, 28% strand | P76541 |
Ligands and binding sites
- HG · Mercury (II) ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 205 | 0.52 | 0.77 | 23 | empty |
| 2 | 212 | 0.52 | 0.77 | 26 | empty |
| 3 | 107 | 0.43 | 0.77 | 21 | empty |
| 4 | 101 | 0.41 | 0.77 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 113 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 3GFH · Crystal structure of EUTL shell protein of the bacterial ethanolamine micrompartment · the same entry in another collection · chain B against B, TM-score 1.00
- P76541 · AlphaFold monomer V2.0 prediction for ethanolamine utilization protein eutl (P76541) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P76541
- Elsewhere: RCSB PDB 3GFH · PDBe 3GFH · UniProt P76541
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