Research workbench
GAL6 (yeast bleomycin hydrolase) mutant C73A/DELTAK454
Analyse GAL6 (yeast bleomycin hydrolase) mutant C73A/DELTAK454 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3GCB
- Type
- protein
- Length
- 458 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GAL6
- EC
- 3.4.22.-
- UniProt
- Q01532
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | GAL6 (EC 3.4.22.-) | protein | 458 | 43% helix, 17% strand | Q01532 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 186 | 0.65 | 0.85 | 33 | empty |
| 2 | 132 | 0.48 | 0.78 | 24 | empty |
| 3 | 125 | 0.41 | 0.75 | 18 | empty |
Compared structures
- 3GCB · GAL6 (yeast bleomycin hydrolase) mutant C73A/DELTAK454 · the same entry in another collection · chain A against A, TM-score 1.00
- Q01532 · AlphaFold monomer V2.0 prediction for cysteine proteinase 1, mitochondrial (Q01532) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q01532
- Elsewhere: RCSB PDB 3GCB · PDBe 3GCB · UniProt Q01532
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